Ploidyfrost
Webbreference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph - PloidyFrost/README.md at main · CMB-BNU/PloidyFrost Webb1 feb. 2024 · We have developed ploidyfrost, a de Bruijn graph‐based method, to estimate ploidy levels from whole genome sequencing data sets without a reference genome. ploidyfrost provides a visual representation of allele frequency distribution generated using the ggplot2 package as well as quantitative results using the Gaussian mixture model.
Ploidyfrost
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WebbThe hypotheses were: (1) Direct selection by freezing tests gives a stronger selection response than indirect selection based on photoacclimation (Chl-a fluorimetry); (2) … WebbDa-Yong ZHANG, Laboratory Head Cited by 3,677 of Beijing Normal University, Beijing (bnu) Read 154 publications Contact Da-Yong ZHANG
WebbDetection of individual ploidy levels with genotyping-bysequencing (GBS) analysis. Molecular Ecology Resources, 17 (6), 1156–1167. doi: 10.1111/1755-0998.12657. Poppr does not call ploidy level ... Webbreference-free ploidy estimation from whole genome sequencing data based on de Bruijn graph - PloidyFrost/CMakeLists.txt at main · BlueBerrySun/PloidyFrost
Webb1 dec. 2024 · Ploidyfrost, a de Bruijn graph‐based method, to estimate ploidy levels from whole genome sequencing data sets without a reference genome is developed and it is … Webb30 maj 2024 · Python 2 2. fisher_combination Public. Forked from lnscan/fisher_combination. Calculate combined multiple P values to one P value using Fisher's combination. Python. CMB-BNU Public. Config files …
WebbWe have developed ploidyfrost , a de Bruijn graph‐based method, to estimate ploidy levels from whole genome sequencing data sets without a reference genome. ploidyfrost …
WebbGitHub is where people build software. More than 100 million people use GitHub to discover, fork, and contribute to over 330 million projects. honeywell hon 873Webb4 apr. 2024 · Ploidyfrost, a de Bruijn graph‐based method, to estimate ploidy levels from whole genome sequencing data sets without a reference genome is developed and it is demonstrated that the accuracy of analysis results can be improved by constraining a threshold such as Cramér's V coefficient on variant features. Expand honeywell hon 835Webb14 okt. 2024 · Additionally, ploidyfrost can be used to analyse multiple samples simultaneously based on compacted CDBG and the related ranking method can help … honeywell hon 917Webb27 sep. 2024 · Usage: PloidyFrost -g -d -o ... parameters with required argument: -g, Input Bifrost Graph file (GFA format) -f, Input … honeywell honeywell hwm440wc humidifierWebbPloidyFrost provides a visual representation of allele frequency distribution generated using the ggplot2 package as well as quantitative results using the Gaussian mixture model. In addition, it takes advantage of colouring information encoded in coloured de Bruijn graphs to analyse multiple samples simultaneously and to flexibly filter putative … honeywell honview for windows 10Webb15 maj 2024 · Findings are important in breeding new cultivars with desired horticultural traits, thus improving the commercial characteristics for the sustainable production of honeybush. Cyclopia (honeybush) species are widely-used in the production of a South African herbal tea and are endemic to the fynbos region of the Western and Eastern … honeywell hon 502honeywell honview for pc