Simpleaffy包
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Simpleaffy包
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Webb8 nov. 2024 · In simpleaffy: Very simple high level analysis of Affymetrix data Description Arguments Details Usage Author (s) See Also Examples View source: R/qc.stats.R Description Generates a visual summary of the various QC statistics recommended by Affymetrix in their 'Data Analysis Fundamentals' handbook. Arguments Details Webb13 jan. 2024 · Warning message: In .inet_warning(msg) : package 'simpleaffy' is not available for Bioconductor version '3.14' And if you go to the release announcement for Bioc 3.13, and go waay to the bottom under 'Deprecated and Defunct Packages' you can see that simpleaffy got removed.
WebbDescription. Provides high level functions for reading Affy .CEL files, phenotypic data, and then computing simple things with it, such as t-tests, fold changes and the like. Makes … Webbsimpleaffy Very simple high level analysis of Affymetrix data Bioconductor version: 3.0 Provides high level functions for reading Affy .CEL files, phenotypic data, and then …
WebbThe simpleaffy package isn't designed for the current generation of Affy chips. It assumes that the chip has MM probes, which isn't true for the random primer type chips. There are only two packages designed for these chips - oligo and xps. Both have vignettes that provide helpful hints. Webb11 apr. 2024 · Download stats for software package simpleaffy. This page was generated on 2024-04-04 19:53:51 -0400 (Tue, 04 Apr 2024). Note that simpleaffy doesn't belong to …
Webb13 jan. 2024 · simpleaffy was meant to work with the affy package, which itself has been superceded by oligo. If you want a good primer, you could read the End to End workflow. …
WebbBest, Jim James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 >>> "Gareth Hughes" 03/24/04 03:23AM >>> Hello, I'm interested in taking in look at the higher level simple analysis of affymetrix data … flirts to say to your bfWebb27 okt. 2024 · simpleaffy: Very simple high level analysis of Affymetrix data. Provides high level functions for reading Affy .CEL files, phenotypic data, and then computing simple … great fine art photographersWebb24 apr. 2013 · simpleaffy, yaqcaffy 3′/5′ for b-actin and GAPDH a simpleaffy RNA degradation plot affy Hybridization and overall signal quality Spike-in hybrid. controls a simpleaffy Background intensity a simpleaffy Percentage present a simpleaffy Present/Marg./Absent calls simpleaffy Pos/Neg control distribution affyQCReport flirts to say to someoneWebbBut I need to use another QC method from yaqcaffy package (spike controls for lys, phe, thr, dap) and it's not possible to change any file in yaqc library I think.? For another chip, U133A X3P I've not found any information about QC. I suppose this chip is very similar to hgu133plus2 chip but I'm not sure. flirt sushi lounge sarasotahttp://www.news.cn/2024-04/13/c_1129520608.htm flirts with attitude great yarmouthsimpleaffy Very simple high level analysis of Affymetrix data Bioconductor version: 2.7 Provides high level functions for reading Affy .CEL files, phenotypic data, and then computing simple things with it, such as t-tests, fold changes and the like. Makes heavy use of the affy library. flirts with crosswordWebb28 aug. 2024 · I have installed simpleaffy package, then when I try to use it appears an error. library(simpleaffy) Loading required package: genefilter Error: package or namespace ... flirts with everyone but me